U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

kirrel3b kirre like nephrin family adhesion molecule 3b [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109512901, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
kirrel3b
Gene description
kirre like nephrin family adhesion molecule 3b
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Also known as
kirrel3
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See kirrel3b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805074.1 (1177238..1315116, complement)

NW_017805074.1Genomic Context describing neighboring genes Neighboring gene BARX homeobox 2 Neighboring gene RNA binding motif protein 7 Neighboring gene somatolactin alpha Neighboring gene v-ets avian erythroblastosis virus E26 oncogene homolog 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_017805074.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
kin of IRRE-like protein 3
Names
kin of IRRE like 3
kirre like nephrin family adhesion molecule 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805074.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    1177238..1315116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019864994.1 → XP_019720553.1  kin of IRRE-like protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A3Q2XUM4
    Conserved Domains (5) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:388 → 485
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    cl11960
    Location:234 → 301
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  2. XM_019864991.1 → XP_019720550.1  kin of IRRE-like protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A3Q2XUM4
    Conserved Domains (5) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:388 → 485
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    cl11960
    Location:234 → 301
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  3. XM_019864990.1 → XP_019720549.1  kin of IRRE-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2XUM4
    Conserved Domains (5) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:388 → 485
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    cl11960
    Location:234 → 301
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  4. XM_019864993.1 → XP_019720552.1  kin of IRRE-like protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A3Q2XUM4
    Conserved Domains (5) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:388 → 485
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    cl11960
    Location:234 → 301
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  5. XM_019864992.1 → XP_019720551.1  kin of IRRE-like protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A3Q2XUM4
    Conserved Domains (5) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:388 → 485
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    cl11960
    Location:234 → 301
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  6. XM_019864989.1 → XP_019720548.1  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2XUM4
    Conserved Domains (5) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:388 → 485
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    cl11960
    Location:234 → 301
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  7. XM_019864988.1 → XP_019720547.1  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2XUM4
    Conserved Domains (5) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:388 → 485
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    cl11960
    Location:234 → 301
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.