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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109508242, updated on 14-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
Ensembl:ENSHCOG00000019059
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017808116.1 (39405..124039, complement)

NW_017808116.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7-like Neighboring gene uncharacterized LOC109508243 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem (nuclear organelle) associated protein 5 Neighboring gene CCR4-NOT transcription complex, subunit 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017808116.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017808116.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    39405..124039 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019858125.1 → XP_019713684.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A3Q2YPW2
    Related
    ENSHCOP00000015455.1, ENSHCOT00000023363.1
    Conserved Domains (1) summary
    pfam04790
    Location:56 → 313
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_019858126.1 → XP_019713685.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A3Q2YDN8
    Related
    ENSHCOP00000015448.1, ENSHCOT00000028072.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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