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large2 LARGE xylosyl- and glucuronyltransferase 2 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109508198, updated on 14-Mar-2024

Summary

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Gene symbol
large2
Gene description
LARGE xylosyl- and glucuronyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017807733.1 (104834..139911)

NW_017807733.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene EMILIN-1-like Neighboring gene uncharacterized LOC109508202 Neighboring gene 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017807733.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LARGE xylosyl- and glucuronyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017807733.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    104834..139911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019858078.1 → XP_019713637.1  LARGE xylosyl- and glucuronyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2YED6
    Conserved Domains (2) summary
    cd06431
    Location:132 → 411
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:467 → 736
    Glyco_transf_49; Glycosyl-transferase for dystroglycan

  2. XM_019858077.1 → XP_019713636.1  LARGE xylosyl- and glucuronyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2YED6
    Conserved Domains (2) summary
    cd06431
    Location:132 → 411
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:467 → 736
    Glyco_transf_49; Glycosyl-transferase for dystroglycan
Nucleotide Protein
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