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si:dkey-121b10.7 heparan sulfate glucosamine 3-O-sulfotransferase 6-like [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109507520, updated on 14-Mar-2024

Summary

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Gene symbol
si:dkey-121b10.7
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
zebrafish all
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Genomic context

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See si:dkey-121b10.7 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805002.1 (681229..698233, complement)

NW_017805002.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109507575 Neighboring gene MTOR associated protein, LST8 homolog (S. cerevisiae) Neighboring gene meiosis specific with OB-fold Neighboring gene methionine sulfoxide reductase B1b Neighboring gene neuralized E3 ubiquitin protein ligase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805002.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805002.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    681229..698233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019857022.1 → XP_019712581.1  heparan sulfate glucosamine 3-O-sulfotransferase 6-like

    UniProtKB/TrEMBL
    A0A3Q2XBP0
    Conserved Domains (1) summary
    pfam00685
    Location:106 → 342
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

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