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LOC109469521 procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like [ Branchiostoma belcheri (Belcher's lancelet) ]

Gene ID: 109469521, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109469521
Gene description
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma belcheri
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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Genomic context

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See LOC109469521 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current Haploidv18h27 (GCF_001625305.1) Unplaced Scaffold NW_017803558.1 (350334..377087, complement)

NW_017803558.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109469530 Neighboring gene uncharacterized LOC109469531

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017803558.1 Unplaced Scaffold Reference Haploidv18h27 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma belcheri Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Haploidv18h27 Primary Assembly

Genomic

  1. NW_017803558.1 Reference Haploidv18h27 Primary Assembly

    Range
    350334..377087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019768044.1 → XP_019623603.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A6P4YGN6

  2. XM_019768043.1 → XP_019623602.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A6P4YXS3

  3. XM_019768045.1 → XP_019623604.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like isoform X3

    UniProtKB/TrEMBL
    A0A6P4YPJ9
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases