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Upf2 UPF2 regulator of nonsense mediated mRNA decay [ Aedes albopictus (Asian tiger mosquito) ]

Gene ID: 109406901, updated on 15-May-2024

Summary

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Gene symbol
Upf2
Gene description
UPF2 regulator of nonsense mediated mRNA decay
Gene type
protein coding
RefSeq status
MODEL
Organism
Aedes albopictus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia
Orthologs
fruit fly all
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Genomic context

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See Upf2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_01 current AalbF5 (GCF_035046485.1) 1 NC_085136.1 (156821311..156836391, complement)
102 previous assembly Aalbo_primary.1 (GCF_006496715.1) Unplaced Scaffold NW_021837156.1 (50144733..50158165, complement)

Chromosome 1 - NC_085136.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134289669 Neighboring gene tektin-3 Neighboring gene uncharacterized LOC134285222 Neighboring gene glucosidase 2 subunit alpha Neighboring gene neutral alpha-glucosidase AB

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo transcriptome of the Asian tiger mosquito, Aedes albopictus, to identify candidate transcripts for diapause preparation. Poelchau MF, et al. BMC Genomics, 2011 Dec 20. PMID 22185595, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of exon-exon junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulator of nonsense transcripts 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035046485.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AalbF5 Primary Assembly

Genomic

  1. NC_085136.1 Reference AalbF5 Primary Assembly

    Range
    156821311..156836391 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029861937.2 → XP_029717797.2  regulator of nonsense transcripts 2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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