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LOC109358338 probable galacturonosyltransferase-like 1 [ Lupinus angustifolius (narrow-leaved blue lupine) ]

Gene ID: 109358338, updated on 1-Feb-2024

Summary

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Gene symbol
LOC109358338
Gene description
probable galacturonosyltransferase-like 1
Locus tag
TanjilG_14687
Gene type
protein coding
RefSeq status
MODEL
Organism
Lupinus angustifolius
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Genomic context

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See LOC109358338 in Genome Data Viewer
Location:
chromosome: LG10
Exon count:
1
Annotation release Status Assembly Chr Location
100 current LupAngTanjil_v1.0 (GCF_001865875.1) LG10 NC_032018.1 (5128696..5130508)

Chromosome LG10 - NC_032018.1Genomic Context describing neighboring genes Neighboring gene probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 Neighboring gene E3 ubiquitin-protein ligase RNF185-like Neighboring gene putative ER lumen protein-retaining receptor C28H8.4 Neighboring gene protein DA1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032018.1 Chromosome LG10 Reference LupAngTanjil_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers. Kamphuis LG, et al. Plant Biotechnol J, 2015 Jan. PMID 25060816, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lupinus angustifolius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LupAngTanjil_v1.0

Genomic

  1. NC_032018.1 Reference LupAngTanjil_v1.0

    Range
    5128696..5130508
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019602507.1 → XP_019458052.1  probable galacturonosyltransferase-like 1

    UniProtKB/TrEMBL
    A0A394DJJ6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases