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LOC109347960 sucrose synthase-like [ Lupinus angustifolius (narrow-leaved blue lupine) ]

Gene ID: 109347960, updated on 1-Feb-2024

Summary

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Gene symbol
LOC109347960
Gene description
sucrose synthase-like
Locus tag
TanjilG_26026
Gene type
protein coding
RefSeq status
MODEL
Organism
Lupinus angustifolius
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Genomic context

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See LOC109347960 in Genome Data Viewer
Location:
chromosome: LG01
Exon count:
15
Annotation release Status Assembly Chr Location
100 current LupAngTanjil_v1.0 (GCF_001865875.1) LG01 NC_032009.1 (3773013..3780569, complement)

Chromosome LG01 - NC_032009.1Genomic Context describing neighboring genes Neighboring gene auxin-responsive protein SAUR50-like Neighboring gene uncharacterized LOC109347914 Neighboring gene eukaryotic translation initiation factor 3 subunit K-like Neighboring gene phosphoinositide phosphatase SAC4-like Neighboring gene conserved oligomeric Golgi complex subunit 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032009.1 Chromosome LG01 Reference LupAngTanjil_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers. Kamphuis LG, et al. Plant Biotechnol J, 2015 Jan. PMID 25060816, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lupinus angustifolius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LupAngTanjil_v1.0

Genomic

  1. NC_032009.1 Reference LupAngTanjil_v1.0

    Range
    3773013..3780569 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019588116.1 → XP_019443661.1  sucrose synthase-like

    UniProtKB/TrEMBL
    A0A1J7IVN4

  2. XM_019588107.1 → XP_019443652.1  sucrose synthase-like

    UniProtKB/TrEMBL
    A0A1J7IVN4
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases