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LOC109340107 alpha-amylase [ Lupinus angustifolius (narrow-leaved blue lupine) ]

Gene ID: 109340107, updated on 1-Feb-2024

Summary

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Gene symbol
LOC109340107
Gene description
alpha-amylase
Locus tag
TanjilG_05525
Gene type
protein coding
RefSeq status
MODEL
Organism
Lupinus angustifolius
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Genomic context

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See LOC109340107 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current LupAngTanjil_v1.0 (GCF_001865875.1) Unplaced Scaffold NW_017725456.1 (4917..7012, complement)

NW_017725456.1Genomic Context describing neighboring genes Neighboring gene abscisic acid 8'-hydroxylase 4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017725456.1 Unplaced Scaffold Reference LupAngTanjil_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers. Kamphuis LG, et al. Plant Biotechnol J, 2015 Jan. PMID 25060816, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-amylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lupinus angustifolius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LupAngTanjil_v1.0

Genomic

  1. NW_017725456.1 Reference LupAngTanjil_v1.0

    Range
    4917..7012 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019577681.1 → XP_019433226.1  alpha-amylase

    UniProtKB/TrEMBL
    A0A394DE39
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases