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LOC109331953 hydroxyproline O-galactosyltransferase HPGT1-like [ Lupinus angustifolius (narrow-leaved blue lupine) ]

Gene ID: 109331953, updated on 1-Feb-2024

Summary

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Gene symbol
LOC109331953
Gene description
hydroxyproline O-galactosyltransferase HPGT1-like
Locus tag
TanjilG_22126
Gene type
protein coding
RefSeq status
MODEL
Organism
Lupinus angustifolius
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Genomic context

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See LOC109331953 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
12
Annotation release Status Assembly Chr Location
100 current LupAngTanjil_v1.0 (GCF_001865875.1) LG17 NC_032025.1 (624089..629507, complement)

Chromosome LG17 - NC_032025.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase HSL1-like Neighboring gene ethylene-responsive transcription factor CRF2-like Neighboring gene uncharacterized protein At5g41620-like Neighboring gene GDT1-like protein 1, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032025.1 Chromosome LG17 Reference LupAngTanjil_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers. Kamphuis LG, et al. Plant Biotechnol J, 2015 Jan. PMID 25060816, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lupinus angustifolius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LupAngTanjil_v1.0

Genomic

  1. NC_032025.1 Reference LupAngTanjil_v1.0

    Range
    624089..629507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019566769.1 → XP_019422314.1  hydroxyproline O-galactosyltransferase HPGT1-like isoform X1

    UniProtKB/TrEMBL
    A0A4P1QTZ0

  2. XM_019566770.1 → XP_019422315.1  hydroxyproline O-galactosyltransferase HPGT1-like isoform X2

    UniProtKB/TrEMBL
    A0A4P1QTZ0
Nucleotide Protein
Heading Accession and Version

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