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SDC2 syndecan 2 [ Crocodylus porosus (Australian saltwater crocodile) ]

Gene ID: 109320654, updated on 14-Mar-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Crocodylus porosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Longirostres; Crocodylidae; Crocodylus
Orthologs
human mouse all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current CroPor_comp1 (GCF_001723895.1) Unplaced Scaffold NW_017728886.1 (231627520..231728212)

NW_017728886.1Genomic Context describing neighboring genes Neighboring gene mitochondrial transcription termination factor 3 Neighboring gene phosphatidylserine synthase 1 Neighboring gene carboxypeptidase Q Neighboring gene uncharacterized LOC109320686 Neighboring gene uncharacterized LOC109305558

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017728886.1 Unplaced Scaffold Reference CroPor_comp1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crocodylus porosus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CroPor_comp1 Primary Assembly

Genomic

  1. NW_017728886.1 Reference CroPor_comp1 Primary Assembly

    Range
    231627520..231728212
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019550849.1 → XP_019406394.1  syndecan-2

    UniProtKB/TrEMBL
    A0A7M4E3B7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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