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TMTC3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Crocodylus porosus (Australian saltwater crocodile) ]

Gene ID: 109316882, updated on 14-Mar-2024

Summary

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Gene symbol
TMTC3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
See related
Ensembl:ENSCPRG00005002825
Gene type
protein coding
RefSeq status
MODEL
Organism
Crocodylus porosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Longirostres; Crocodylidae; Crocodylus
Orthologs
human mouse all
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Genomic context

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See TMTC3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current CroPor_comp1 (GCF_001723895.1) Unplaced Scaffold NW_017728931.1 (66091782..66151671, complement)

NW_017728931.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109316880 Neighboring gene KIT ligand Neighboring gene centrosomal protein 290 Neighboring gene chromosome unknown C12orf50 homolog Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017728931.1 Unplaced Scaffold Reference CroPor_comp1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 3
Names
transmembrane and tetratricopeptide repeat containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crocodylus porosus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CroPor_comp1 Primary Assembly

Genomic

  1. NW_017728931.1 Reference CroPor_comp1 Primary Assembly

    Range
    66091782..66151671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019545269.1 → XP_019400814.1  transmembrane and TPR repeat-containing protein 3 isoform X2

  2. XM_019545267.1 → XP_019400812.1  transmembrane and TPR repeat-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A7M4FSC5
    Related
    ENSCPRP00005003855.1, ENSCPRT00005004518.1

  3. XM_019545268.1 → XP_019400813.1  transmembrane and TPR repeat-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A7M4FSC5

  4. XM_019545270.1 → XP_019400815.1  transmembrane and TPR repeat-containing protein 3 isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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