U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HSPG2 heparan sulfate proteoglycan 2 [ Crocodylus porosus (Australian saltwater crocodile) ]

Gene ID: 109314507, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
HSPG2
Gene description
heparan sulfate proteoglycan 2
See related
Ensembl:ENSCPRG00005015064
Gene type
protein coding
RefSeq status
MODEL
Organism
Crocodylus porosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Longirostres; Crocodylidae; Crocodylus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See HSPG2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
96
Annotation release Status Assembly Chr Location
100 current CroPor_comp1 (GCF_001723895.1) Unplaced Scaffold NW_017728926.1 (9485090..9570863)

NW_017728926.1Genomic Context describing neighboring genes Neighboring gene tyrosine-protein kinase STYK1-like Neighboring gene transmembrane protein 269 Neighboring gene low density lipoprotein receptor class A domain containing 2 Neighboring gene ubiquitin specific peptidase 48

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_017728926.1 Unplaced Scaffold Reference CroPor_comp1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: basement membrane-specific heparan sulfate proteoglycan core protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Crocodylus porosus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CroPor_comp1 Primary Assembly

Genomic

  1. NW_017728926.1 Reference CroPor_comp1 Primary Assembly

    Range
    9485090..9570863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019541720.1 → XP_019397265.1  LOW QUALITY PROTEIN: basement membrane-specific heparan sulfate proteoglycan core protein

    UniProtKB/TrEMBL
    A0A7M4G0T5
    Related
    ENSCPRP00005021999.1, ENSCPRT00005025714.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.