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SGPL1 sphingosine-1-phosphate lyase 1 [ Crocodylus porosus (Australian saltwater crocodile) ]

Gene ID: 109312556, updated on 14-Mar-2024

Summary

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Gene symbol
SGPL1
Gene description
sphingosine-1-phosphate lyase 1
See related
Ensembl:ENSCPRG00005009241
Gene type
protein coding
RefSeq status
MODEL
Organism
Crocodylus porosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Longirostres; Crocodylidae; Crocodylus
Orthologs
human mouse all
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Genomic context

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See SGPL1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current CroPor_comp1 (GCF_001723895.1) Unplaced Scaffold NW_017728920.1 (8108215..8143951, complement)

NW_017728920.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109312572 Neighboring gene pterin-4 alpha-carbinolamine dehydratase 1 Neighboring gene microsomal triglyceride transfer protein large subunit-like Neighboring gene thymus, brain and testes associated

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017728920.1 Unplaced Scaffold Reference CroPor_comp1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphinganine-1-phosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate lyase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crocodylus porosus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CroPor_comp1 Primary Assembly

Genomic

  1. NW_017728920.1 Reference CroPor_comp1 Primary Assembly

    Range
    8108215..8143951 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019538645.1 → XP_019394190.1  sphingosine-1-phosphate lyase 1

    UniProtKB/TrEMBL
    A0A7M4ERI1
    Related
    ENSCPRP00005013024.1, ENSCPRT00005015322.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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