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SMPDL3A sphingomyelin phosphodiesterase acid like 3A [ Crocodylus porosus (Australian saltwater crocodile) ]

Gene ID: 109312154, updated on 14-Mar-2024

Summary

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Gene symbol
SMPDL3A
Gene description
sphingomyelin phosphodiesterase acid like 3A
See related
Ensembl:ENSCPRG00005004899
Gene type
protein coding
RefSeq status
MODEL
Organism
Crocodylus porosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Longirostres; Crocodylidae; Crocodylus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See SMPDL3A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current CroPor_comp1 (GCF_001723895.1) Unplaced Scaffold NW_017728918.1 (99067724..99089064)

NW_017728918.1Genomic Context describing neighboring genes Neighboring gene cAMP-dependent protein kinase inhibitor beta Neighboring gene fatty acid binding protein 7 Neighboring gene coiled-coil domain containing 185 Neighboring gene clavesin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017728918.1 Unplaced Scaffold Reference CroPor_comp1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crocodylus porosus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CroPor_comp1 Primary Assembly

Genomic

  1. NW_017728918.1 Reference CroPor_comp1 Primary Assembly

    Range
    99067724..99089064
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019538197.1 → XP_019393742.1  acid sphingomyelinase-like phosphodiesterase 3a

    UniProtKB/TrEMBL
    A0A7M4EAJ6
    Related
    ENSCPRP00005006882.1, ENSCPRT00005008065.1
Nucleotide Protein
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