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CHAMP1 chromosome alignment maintaining phosphoprotein 1 [ Crocodylus porosus (Australian saltwater crocodile) ]

Gene ID: 109306278, updated on 14-Mar-2024

Summary

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Gene symbol
CHAMP1
Gene description
chromosome alignment maintaining phosphoprotein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Crocodylus porosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Longirostres; Crocodylidae; Crocodylus
Orthologs
human mouse all
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Genomic context

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See CHAMP1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current CroPor_comp1 (GCF_001723895.1) Unplaced Scaffold NW_017728906.1 (92069617..92080334, complement)

NW_017728906.1Genomic Context describing neighboring genes Neighboring gene septin 10 Neighboring gene sosondowah ankyrin repeat domain family member C Neighboring gene uncharacterized LOC109306279 Neighboring gene UPF3A regulator of nonsense mediated mRNA decay

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017728906.1 Unplaced Scaffold Reference CroPor_comp1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in attachment of mitotic spindle microtubules to kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: chromosome alignment-maintaining phosphoprotein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crocodylus porosus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CroPor_comp1 Primary Assembly

Genomic

  1. NW_017728906.1 Reference CroPor_comp1 Primary Assembly

    Range
    92069617..92080334 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019529606.1 → XP_019385151.1  LOW QUALITY PROTEIN: chromosome alignment-maintaining phosphoprotein 1

    UniProtKB/TrEMBL
    A0A7M4FF21
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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