U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SC5D sterol-C5-desaturase [ Gavialis gangeticus (Gharial) ]

Gene ID: 109292520, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SC5D
Gene description
sterol-C5-desaturase
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavialis gangeticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Longirostres; Gavialidae; Gavialinae; Gavialis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SC5D in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current GavGan_comp1 (GCF_001723915.1) Unplaced Scaffold NW_017728980.1 (11526905..11536519, complement)

NW_017728980.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109292502 Neighboring gene sortilin related receptor 1 Neighboring gene uncharacterized LOC109291441 Neighboring gene tectorin alpha

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_017728980.1 Unplaced Scaffold Reference GavGan_comp1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
lathosterol oxidase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gavialis gangeticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GavGan_comp1 Primary Assembly

Genomic

  1. NW_017728980.1 Reference GavGan_comp1 Primary Assembly

    Range
    11526905..11536519 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019509990.1 → XP_019365535.1  lathosterol oxidase

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.