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SGCD sarcoglycan delta [ Gavialis gangeticus (Gharial) ]

Gene ID: 109289849, updated on 14-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavialis gangeticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Longirostres; Gavialidae; Gavialinae; Gavialis
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current GavGan_comp1 (GCF_001723915.1) Unplaced Scaffold NW_017729000.1 (2661303..2958706, complement)

NW_017729000.1Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 1 homolog Neighboring gene T-cell immunoglobulin and mucin domain-containing protein 4-like Neighboring gene uncharacterized LOC109289850 Neighboring gene mitochondrial ribosomal protein L22

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017729000.1 Unplaced Scaffold Reference GavGan_comp1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gavialis gangeticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GavGan_comp1 Primary Assembly

Genomic

  1. NW_017729000.1 Reference GavGan_comp1 Primary Assembly

    Range
    2661303..2958706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019506088.1 → XP_019361633.1  delta-sarcoglycan

  2. XM_019506087.1 → XP_019361632.1  delta-sarcoglycan

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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