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P3H2 prolyl 3-hydroxylase 2 [ Gavialis gangeticus (Gharial) ]

Gene ID: 109288104, updated on 14-Mar-2024

Summary

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Gene symbol
P3H2
Gene description
prolyl 3-hydroxylase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavialis gangeticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Longirostres; Gavialidae; Gavialinae; Gavialis
Orthologs
human mouse all
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Genomic context

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See P3H2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current GavGan_comp1 (GCF_001723915.1) Unplaced Scaffold NW_017728995.1 (33607557..33626868, complement)

NW_017728995.1Genomic Context describing neighboring genes Neighboring gene tumor protein p63 regulated 1 Neighboring gene tumor protein p63 Neighboring gene uncharacterized LOC109287835 Neighboring gene claudin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017728995.1 Unplaced Scaffold Reference GavGan_comp1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gavialis gangeticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GavGan_comp1 Primary Assembly

Genomic

  1. NW_017728995.1 Reference GavGan_comp1 Primary Assembly

    Range
    33607557..33626868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019503477.1 → XP_019359022.1  prolyl 3-hydroxylase 2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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