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TIP4-3 Aquaporin TIP4-3 [ Zea mays ]

Gene ID: 109280157, updated on 14-Dec-2023

Summary

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Gene symbol
TIP4-3
Gene description
Aquaporin TIP4-3
Locus tag
ZEAMMB73_Zm00001d039713
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
ZmTIP4-3; ZmTIP4;3; GRMZM2G146627
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Genomic context

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See TIP4-3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 3 NC_050098.1 (13496267..13499135)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 3 NC_024461.2 (12824042..12826910)

Chromosome 3 - NC_050098.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100502230 Neighboring gene Protein NETWORKED 4A Neighboring gene Pentatricopeptide repeat-containing protein Neighboring gene uncharacterized LOC100275808 Neighboring gene ultraviolet-B-repressible protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Aquaporins constitute a large and highly divergent protein family in maize. Chaumont F, et al. Plant Physiol, 2001 Mar. PMID 11244102, Free PMC Article
  2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables water channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in water transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aquaporin TIP4-3
Names
TIP4;3
aquaporin TIP4.1
tonoplast intrinsic protein 4-3
tonoplast intrinsic protein4
tonoplast membrane integral protein TIP4-3
tonoplast membrane integral protein ZmTIP4-3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347696.2 → NP_001334625.1  aquaporin TIP4-3

    Status: VALIDATED

    Source sequence(s)
    CABHLF010000002, DV549887, EE163646
    UniProtKB/Swiss-Prot
    Q9ATL4
    UniProtKB/TrEMBL
    A0A1D6MKQ5, A0A3L6FMZ0
    Conserved Domains (1) summary
    cl00200
    Location:3 → 248
    MIP; Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal ...

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050098.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    13496267..13499135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001111565.1: Suppressed sequence

    Description
    NM_001111565.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.

  2. NM_001254840.1: Suppressed sequence

    Description
    NM_001254840.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ATL4.1 GenPept UniProtKB/Swiss-Prot:Q9ATL4

Gene LinkOut

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Molecular Biology Databases