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LOC109280143 VISTA enhancer mm1334 [ Mus musculus (house mouse) ]

Gene ID: 109280143, updated on 9-Aug-2024

Summary

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Gene symbol
LOC109280143
Gene description
VISTA enhancer mm1334
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mm1334; Rr1657
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC109280143 in Genome Data Viewer
Location:
chromosome: 13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (84929904..84934085)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (84781785..84785966)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_35164 Neighboring gene STARR-seq mESC enhancer starr_35165 Neighboring gene predicted gene, 41011 Neighboring gene STARR-seq mESC enhancer starr_35166 Neighboring gene STARR-seq mESC enhancer starr_35167 Neighboring gene STARR-seq mESC enhancer starr_35168 Neighboring gene predicted gene, 34196 Neighboring gene predicted gene, 34246 Neighboring gene STARR-seq mESC enhancer starr_35170 Neighboring gene STARR-seq mESC enhancer starr_35171 Neighboring gene STARR-seq mESC enhancer starr_35174 Neighboring gene ribosomal protein L13A-like pseudogene Neighboring gene smoothened homolog pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • regulatory region 1657

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054412.1 

    Range
    101..4282
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    84929904..84934085
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version