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LOC109280080 VISTA enhancer mm763 [ Mus musculus (house mouse) ]

Gene ID: 109280080, updated on 9-Aug-2024

Summary

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Gene symbol
LOC109280080
Gene description
VISTA enhancer mm763
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mm763; Rr1441
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC109280080 in Genome Data Viewer
Location:
chromosome: 10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (30929077..30930084)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (31053081..31054088)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5124 Neighboring gene STARR-seq mESC enhancer starr_26205 Neighboring gene STARR-seq mESC enhancer starr_26206 Neighboring gene hairy/enhancer-of-split related with YRPW motif 2 Neighboring gene STARR-seq mESC enhancer starr_26207 Neighboring gene predicted gene, 24168 Neighboring gene VISTA enhancer mm766 Neighboring gene VISTA enhancer mm764 Neighboring gene STARR-seq mESC enhancer starr_26208 Neighboring gene predicted gene, 30676 Neighboring gene STARR-seq mESC enhancer starr_26209 Neighboring gene STARR-seq mESC enhancer starr_26210 Neighboring gene predicted gene, 23790 Neighboring gene STARR-seq mESC enhancer starr_26212 Neighboring gene spermine synthase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • regulatory region 1441

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054349.1 

    Range
    101..1108
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    30929077..30930084
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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