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LOC109280070 VISTA enhancer mm652 [ Mus musculus (house mouse) ]

Gene ID: 109280070, updated on 9-Aug-2024

Summary

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Gene symbol
LOC109280070
Gene description
VISTA enhancer mm652
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mm652; Rr1383
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC109280070 in Genome Data Viewer
Location:
chromosome: 13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (15838939..15839890)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (15664354..15665305)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1893 Neighboring gene STARR-seq mESC enhancer starr_33728 Neighboring gene predicted gene, 20043 Neighboring gene STARR-seq mESC enhancer starr_33729 Neighboring gene VISTA enhancer mm1896 Neighboring gene STARR-seq mESC enhancer starr_33730 Neighboring gene STARR-seq mESC enhancer starr_33731 Neighboring gene predicted gene 6556 Neighboring gene STARR-seq mESC enhancer starr_33733 Neighboring gene GLI-Kruppel family member GLI3 Neighboring gene VISTA enhancer mm1912 Neighboring gene VISTA enhancer mm2028 Neighboring gene VISTA enhancer mm1935 Neighboring gene RIKEN cDNA 4933412O06 gene Neighboring gene predicted gene, 57607

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • regulatory region 1383

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054339.1 

    Range
    101..1052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    15838939..15839890
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version