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LOC109279998 VISTA enhancer mm878 [ Mus musculus (house mouse) ]

Gene ID: 109279998, updated on 9-Aug-2024

Summary

Gene symbol
LOC109279998
Gene description
VISTA enhancer mm878
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mm878; Rr1474
Summary
This locus includes a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in embryonic forebrain of transgenic mice. This locus also includes an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

See LOC109279998 in Genome Data Viewer
Location:
chromosome: 6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (94730079..94734811)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (94753098..94757440)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene microRNA 7041 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:94587371-94587480 Neighboring gene leucine-rich repeats and immunoglobulin-like domains 1 Neighboring gene VISTA enhancer mm1736 Neighboring gene STARR-seq mESC enhancer starr_16724 Neighboring gene prefoldin 4 pseudogene Neighboring gene STARR-seq mESC enhancer starr_16726 Neighboring gene STARR-seq mESC enhancer starr_16728 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-seq mESC enhancer starr_16730 Neighboring gene STARR-seq mESC enhancer starr_16731 Neighboring gene RIKEN cDNA 4930511E03 gene

Genomic regions, transcripts, and products

General gene information

Other Names

  • STARR-seq mESC enhancer starr_16725
  • regulatory region 1474

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054269.2 

    Range
    101..4833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    94730079..94734811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)