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LOC109279886 VISTA enhancers mm18 and mm257 [ Mus musculus (house mouse) ]

Gene ID: 109279886, updated on 9-Aug-2024

Summary

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Gene symbol
LOC109279886
Gene description
VISTA enhancers mm18 and mm257
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mm18; Rr1176
Summary
This locus represents two conserved genomic elements that can function as enhancers. They can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Apr 2017]
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Genomic context

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See LOC109279886 in Genome Data Viewer
Location:
chromosome: 18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (75634668..75638901)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (75501597..75505830)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene SMAD family member 7 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:75579115-75579397 Neighboring gene predicted gene, 41776 Neighboring gene STARR-seq mESC enhancer starr_45075 Neighboring gene CBP80/20-dependent translation initiation factor Neighboring gene predicted gene, 52357 Neighboring gene STARR-seq mESC enhancer starr_45078 Neighboring gene predicted gene 10532 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:75722201-75722354 Neighboring gene STARR-positive B cell enhancer ABC_E5665 Neighboring gene thymosin, beta 10 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • VISTA enhancer mm18
  • VISTA enhancer mm257
  • regulatory region 1176

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054158.1 

    Range
    101..4334
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    75634668..75638901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version