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SGCD sarcoglycan delta [ Panthera pardus (leopard) ]

Gene ID: 109276011, updated on 14-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
See related
Ensembl:ENSPPRG00000003201
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera pardus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current ASM2436296v1 (GCF_024362965.1) Unplaced Scaffold NW_026526765.1 (47411783..48351721)
100 previous assembly PanPar1.0 (GCF_001857705.1) Unplaced Scaffold NW_017619889.1 (18581851..19577534)

NW_026526765.1Genomic Context describing neighboring genes Neighboring gene methylosome subunit pICln-like Neighboring gene uncharacterized LOC128778352 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC109276048 Neighboring gene T cell immunoglobulin and mucin domain containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024362965.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2436296v1 Primary Assembly

Genomic

  1. NW_026526765.1 Reference ASM2436296v1 Primary Assembly

    Range
    47411783..48351721
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019464511.2 → XP_019320056.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A9V1GDD0
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_019464512.2 → XP_019320057.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A9V1GDD0
    Related
    ENSPPRP00000008365.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_019464513.2 → XP_019320058.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A9V1GDA1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 236
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_019464510.2 → XP_019320055.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A9V1GDD0
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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