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LOC109212728 probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 [ Nicotiana attenuata ]

Gene ID: 109212728, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109212728
Gene description
probable tRNA (guanine(26)-N(2))-dimethyltransferase 1
Locus tag
A4A49_23038
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana attenuata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC109212728 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current NIATTr2 (GCF_001879085.1) Unplaced Scaffold NW_017672321.1 (130463..138671, complement)

NW_017672321.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 85A1 Neighboring gene alpha-1,4-glucan-protein synthase [UDP-forming] 1-like Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene uncharacterized LOC109212727

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017672321.1 Unplaced Scaffold Reference NIATTr2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular evolution and diversification of the Argonaute family of proteins in plants. Singh RK, et al. BMC Plant Biol, 2015 Jan 28. PMID 25626325, Free PMC Article
  2. Cytokinin levels and signaling respond to wounding and the perception of herbivore elicitors in Nicotiana attenuata. Schäfer M, et al. J Integr Plant Biol, 2015 Feb. PMID 24924599, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA N2-guanine methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable tRNA (guanine(26)-N(2))-dimethyltransferase 1
Names
putative trna (guanine(26)-n(2))-dimethyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana attenuata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NIATTr2

Genomic

  1. NW_017672321.1 Reference NIATTr2

    Range
    130463..138671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019376400.1 → XP_019231945.1  probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 isoform X2

  2. XM_019376399.1 → XP_019231944.1  probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A1J6KUE1
Nucleotide Protein
Heading Accession and Version

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