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LOC109178713 probable beta-1,4-xylosyltransferase IRX9H [ Ipomoea nil (Japanese morning glory) ]

Gene ID: 109178713, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109178713
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea nil
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Genomic context

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See LOC109178713 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Asagao_1.1 (GCF_001879475.1) Unplaced Scaffold NW_017617293.1 (1532047..1538250)

NW_017617293.1Genomic Context describing neighboring genes Neighboring gene L-gulonolactone oxidase 3 Neighboring gene U11/U12 small nuclear ribonucleoprotein 59 kDa protein Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene uncharacterized LOC109178714 Neighboring gene tocopherol cyclase, chloroplastic Neighboring gene transfer RNA serine (anticodon CGA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017617293.1 Unplaced Scaffold Reference Asagao_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ipomoea nil Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asagao_1.1 Primary Assembly

Genomic

  1. NW_017617293.1 Reference Asagao_1.1 Primary Assembly

    Range
    1532047..1538250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019328249.1 → XP_019183794.1  probable beta-1,4-xylosyltransferase IRX9H

  2. XM_019328250.1 → XP_019183795.1  probable beta-1,4-xylosyltransferase IRX9H

Nucleotide Protein
Heading Accession and Version

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