U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC109175198 xyloglucan endotransglucosylase/hydrolase 2-like [ Ipomoea nil (Japanese morning glory) ]

Gene ID: 109175198, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC109175198
Gene description
xyloglucan endotransglucosylase/hydrolase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea nil
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Also known as
InXTH3
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC109175198 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Asagao_1.1 (GCF_001879475.1) Unplaced Scaffold NW_017617112.1 (1154246..1155874, complement)

NW_017617112.1Genomic Context describing neighboring genes Neighboring gene crocetin glucosyltransferase, chloroplastic-like Neighboring gene uncharacterized LOC109175196 Neighboring gene protein TIC 22-like, chloroplastic Neighboring gene mediator of RNA polymerase II transcription subunit 27

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_017617112.1 Unplaced Scaffold Reference Asagao_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Length of the dark period affects flower opening and the expression of circadian-clock associated genes as well as xyloglucan endotransglucosylase/hydrolase genes in petals of morning glory (Ipomoea nil). Shinozaki Y, et al. Plant Cell Rep, 2014 Jul. PMID 24682460

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
xyloglucan endotransglucosylase/hydrolase 2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ipomoea nil Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asagao_1.1 Primary Assembly

Genomic

  1. NW_017617112.1 Reference Asagao_1.1 Primary Assembly

    Range
    1154246..1155874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019324453.1 → XP_019179998.1  xyloglucan endotransglucosylase/hydrolase 2-like

    UniProtKB/TrEMBL
    X5I189
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases