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HACD2 3-hydroxyacyl-CoA dehydratase 2 [ Corvus cornix cornix ]

Gene ID: 109145688, updated on 3-Aug-2024

Summary

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Gene symbol
HACD2
Gene description
3-hydroxyacyl-CoA dehydratase 2
See related
EnsemblRapid:ENSCCCG00025000515
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See HACD2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 7 NC_046337.1 (10400584..10421281)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959760.1 (22521127..22535767, complement)

Chromosome 7 - NC_046337.1Genomic Context describing neighboring genes Neighboring gene putative cuticle collagen 91 Neighboring gene coiled-coil domain containing 14 Neighboring gene myosin light chain kinase Neighboring gene uncharacterized LOC109145689 Neighboring gene adenylate cyclase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-hydroxyacyl-CoA dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046337.1 Reference ASM73873v5 Primary Assembly

    Range
    10400584..10421281
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039554979.1 → XP_039410913.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 isoform X1

    Related
    ENSCCCP00025000944.1, ENSCCCT00025001055.1
    Conserved Domains (1) summary
    pfam04387
    Location:77 → 237
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

  2. XM_019290540.3 → XP_019146085.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 isoform X2

    Related
    ENSCCCP00025000931.1, ENSCCCT00025001037.1
    Conserved Domains (1) summary
    pfam04387
    Location:1 → 134
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA
Nucleotide Protein
Heading Accession and Version

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