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EXTL2 exostosin like glycosyltransferase 2 [ Corvus cornix cornix ]

Gene ID: 109143175, updated on 3-Aug-2024

Summary

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Gene symbol
EXTL2
Gene description
exostosin like glycosyltransferase 2
See related
EnsemblRapid:ENSCCCG00025006488
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See EXTL2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 8 NC_046338.1 (19367915..19376764, complement)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959870.1 (19374731..19383322, complement)

Chromosome 8 - NC_046338.1Genomic Context describing neighboring genes Neighboring gene vascular cell adhesion molecule 1 Neighboring gene G protein-coupled receptor 88 Neighboring gene cell division cycle 14A Neighboring gene solute carrier family 30 member 7 Neighboring gene diphthamide biosynthesis 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046338.1 Reference ASM73873v5 Primary Assembly

    Range
    19367915..19376764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039556159.1 → XP_039412093.1  exostosin-like 2 isoform X1

    Related
    ENSCCCP00025011614.1, ENSCCCT00025013423.1
    Conserved Domains (1) summary
    pfam09258
    Location:66 → 317
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_039556160.1 → XP_039412094.1  exostosin-like 2 isoform X2

    Conserved Domains (1) summary
    pfam09258
    Location:66 → 145
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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