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Tsp_05052 putative irregular chiasm C-roughest protein [ Trichinella spiralis ]

Gene ID: 10912923, updated on 28-Dec-2023

Summary

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Gene symbol
Tsp_05052
Gene description
putative irregular chiasm C-roughest protein
Locus tag
Tsp_05052
Gene type
protein coding
RNA name
putative irregular chiasm C-roughest protein
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
6

NW_003528496.1Genomic Context describing neighboring genes Neighboring gene GTP-binding ADP-ribosylation factor Neighboring gene tRNA-Asp Neighboring gene putative immunoglobulin domain protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003528496.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
putative irregular chiasm C-roughest protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003528496.1 Reference assembly

    Range
    1901120..1904862
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003369597.1 → XP_003369645.1  putative irregular chiasm C-roughest protein [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003369645.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5SWW7
    Conserved Domains (3) summary
    smart00408
    Location:75 → 143
    IGc2; Immunoglobulin C-2 Type
    pfam07679
    Location:62 → 159
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:179 → 261
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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