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Tsp_01535 putative tetratricopeptide repeat-containing domain protein [ Trichinella spiralis ]

Gene ID: 10911600, updated on 28-Dec-2023

Summary

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Gene symbol
Tsp_01535
Gene description
putative tetratricopeptide repeat-containing domain protein
Locus tag
Tsp_01535
Gene type
protein coding
RNA name
putative tetratricopeptide repeat-containing domain protein
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
22

NW_003526943.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferasesubunit Neighboring gene lipoic acid synthetase Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003526943.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
putative tetratricopeptide repeat-containing domain protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003526943.1 Reference assembly

    Range
    6250528..6256884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003377303.1 → XP_003377351.1  putative tetratricopeptide repeat-containing domain protein [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003377351.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5SCS6
    Conserved Domains (10) summary
    COG0457
    Location:122 → 386
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG3914
    Location:280 → 970
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:171 → 198
    TPR; TPR repeat [structural motif]
    cd15832
    Location:171 → 209
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:136 → 169
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:25 → 89
    TPR_11; TPR repeat
    pfam13431
    Location:48 → 80
    TPR_17; Tetratricopeptide repeat
    pfam13844
    Location:500 → 932
    Glyco_transf_41; Glycosyl transferase family 41
    pfam14559
    Location:69 → 113
    TPR_19; Tetratricopeptide repeat
    cl24038
    Location:171 → 375
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
Nucleotide Protein
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