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Tsp_05910 heparan sulfate 2-O-sulfotransferase hst-2 [ Trichinella spiralis ]

Gene ID: 10911059, updated on 28-Dec-2023

Summary

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Gene symbol
Tsp_05910
Gene description
heparan sulfate 2-O-sulfotransferase hst-2
Locus tag
Tsp_05910
Gene type
protein coding
RNA name
heparan sulfate 2-O-sulfotransferase hst-2
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
13

NW_003526941.1Genomic Context describing neighboring genes Neighboring gene 5'-AMP-activated protein kinase subunit beta-1 Neighboring gene putative thromboxane-A synthase Neighboring gene heparan sulfate 2-O-sulfotransferase 1 Neighboring gene putative trypsin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003526941.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
heparan sulfate 2-O-sulfotransferase hst-2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003526941.1 Reference assembly

    Range
    5890276..5893867
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003380150.1 → XP_003380198.1  heparan sulfate 2-O-sulfotransferase hst-2 [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003380198.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5S4U3
    Conserved Domains (3) summary
    sd00017
    Location:68 → 89
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:95 → 117
    zf-C2H2; Zinc finger, C2H2 type
    cl22970
    Location:376 → 524
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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