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LOC109110354 telethonin-like [ Cyprinus carpio (common carp) ]

Gene ID: 109110354, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109110354
Gene description
telethonin-like
See related
Ensembl:ENSCCRG00000028097
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

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See LOC109110354 in Genome Data Viewer
Location:
chromosome: A3
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) A3 NC_056574.1 (27796927..27798610, complement)
100 previous assembly common carp genome (GCF_000951615.1) 36 NC_031732.1 (22203307..22205096)

Chromosome A3 - NC_056574.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase TAO2-like Neighboring gene trypsin-2-like Neighboring gene synaptogyrin-1-like Neighboring gene protein FAM171A2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables titin Z domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables titin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cardiac muscle tissue morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cardiac myofibril assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in detection of muscle stretch IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sarcomerogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle myosin thick filament assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle thin filament assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
telethonin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056574.1 Reference ASM1834038v1 Primary Assembly

    Range
    27796927..27798610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019123411.2 → XP_018978956.1  telethonin-like

    UniProtKB/TrEMBL
    A0A8C1D0I0, A0A8C1LUZ9, A0A8C2GQR9, A0A9J8BS40
    Related
    ENSCCRP00000052511.1
Nucleotide Protein
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