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LOC109106312 polypeptide N-acetylgalactosaminyltransferase 1-like [ Cyprinus carpio (common carp) ]

Gene ID: 109106312, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109106312
Gene description
polypeptide N-acetylgalactosaminyltransferase 1-like
See related
Ensembl:ENSCCRG00000026251
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

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See LOC109106312 in Genome Data Viewer
Location:
chromosome: A16
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) A16 NC_056587.1 (10658799..10751135)
100 previous assembly common carp genome (GCF_000951615.1) 32 NC_031728.1 (14942809..14974334, complement)

Chromosome A16 - NC_056587.1Genomic Context describing neighboring genes Neighboring gene INO80 complex subunit C-like Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transmembrane protein 245-like Neighboring gene DOMON domain-containing protein FRRS1L

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056587.1 Reference ASM1834038v1 Primary Assembly

    Range
    10658799..10751135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042771904.1 → XP_042627838.1  polypeptide N-acetylgalactosaminyltransferase 1-like

    UniProtKB/TrEMBL
    A0A8C1YAI7, A0A9Q9YWV1
    Conserved Domains (2) summary
    cd00161
    Location:322 → 440
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    cl11394
    Location:119 → 288
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases