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LOC109105181 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like [ Cyprinus carpio (common carp) ]

Gene ID: 109105181, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109105181
Gene description
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like
See related
Ensembl:ENSCCRG00000036123
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

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See LOC109105181 in Genome Data Viewer
Location:
chromosome: B12
Exon count:
10
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B12 NC_056608.1 (19409881..19422355, complement)
100 previous assembly common carp genome (GCF_000951615.1) 31 NC_031727.1 (24421584..24439750)

Chromosome B12 - NC_056608.1Genomic Context describing neighboring genes Neighboring gene charged multivesicular body protein 6-like Neighboring gene brain-specific angiogenesis inhibitor 1-associated protein 2-like Neighboring gene serine/threonine-protein kinase LMTK1-like Neighboring gene centrosomal protein of 131 kDa Neighboring gene E3 ubiquitin-protein ligase rnf213-beta-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056608.1 Reference ASM1834038v1 Primary Assembly

    Range
    19409881..19422355 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042735905.1 → XP_042591839.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like isoform X3

    UniProtKB/TrEMBL
    A0A8C1DQA5, A0A8C1VSB1, A0A9Q9WYE2
    Conserved Domains (1) summary
    pfam00777
    Location:145 → 431
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_042735903.1 → XP_042591837.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like isoform X1

    UniProtKB/TrEMBL
    A0A8C1HQ65, A0A8C1VSB1, A0A9Q9WYB6
    Conserved Domains (1) summary
    pfam00777
    Location:155 → 441
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_042735906.1 → XP_042591840.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like isoform X4

    UniProtKB/TrEMBL
    A0A8C1VSB1, A0A9Q9WYB0
    Conserved Domains (1) summary
    pfam00777
    Location:137 → 423
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_042735904.1 → XP_042591838.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like isoform X2

    UniProtKB/TrEMBL
    A0A8C1VSB1, A0A9Q9WYB9
    Conserved Domains (1) summary
    pfam00777
    Location:147 → 433
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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