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LOC109103808 gamma-sarcoglycan-like [ Cyprinus carpio (common carp) ]

Gene ID: 109103808, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109103808
Gene description
gamma-sarcoglycan-like
See related
Ensembl:ENSCCRG00000025095
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

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See LOC109103808 in Genome Data Viewer
Location:
chromosome: B15
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B15 NC_056611.1 (9356866..9365264, complement)
100 previous assembly common carp genome (GCF_000951615.1) 30 NC_031726.1 (3157157..3166013)

Chromosome B15 - NC_056611.1Genomic Context describing neighboring genes Neighboring gene GRB2-associated-binding protein 2-like Neighboring gene sacsin-like Neighboring gene potassium channel subfamily K member 13 Neighboring gene glucose-6-phosphate exchanger SLC37A4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056611.1 Reference ASM1834038v1 Primary Assembly

    Range
    9356866..9365264 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042739137.1 → XP_042595071.1  gamma-sarcoglycan-like

    UniProtKB/TrEMBL
    A0A8C1Q903, A0A9J7XNP3, A0A9R0AFP6
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 281
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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