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LOC109100561 DnaJ heat shock protein family (Hsp40) member B6b [ Cyprinus carpio (common carp) ]

Gene ID: 109100561, updated on 14-Mar-2024

Summary

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Gene symbol
LOC109100561
Gene description
DnaJ heat shock protein family (Hsp40) member B6b
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
Also known as
dnajb6b
Orthologs
human zebrafish all
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Genomic context

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See LOC109100561 in Genome Data Viewer
Location:
chromosome: B7
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B7 NC_056603.1 (23865884..23885959, complement)
100 previous assembly common carp genome (GCF_000951615.1) 25 NC_031721.1 (4087224..4099495, complement)

Chromosome B7 - NC_056603.1Genomic Context describing neighboring genes Neighboring gene non-SMC condensin II complex, subunit G2 Neighboring gene protein tyrosine phosphatase receptor type N2 Neighboring gene ubiquitin protein ligase E3C Neighboring gene motor neuron and pancreas homeobox 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Hsp70 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone-mediated protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ homolog subfamily B member 6b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056603.1 Reference ASM1834038v1 Primary Assembly

    Range
    23865884..23885959 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042728039.1 → XP_042583973.1  dnaJ homolog subfamily B member 6b isoform X1

    UniProtKB/TrEMBL
    A0A8C2H530, A0A9J8CFC8, A0A9R0A3S5
    Conserved Domains (1) summary
    PRK10767
    Location:3 → 132
    PRK10767; chaperone protein DnaJ; Provisional

  2. XM_042728040.1 → XP_042583974.1  dnaJ homolog subfamily B member 6b isoform X2

    UniProtKB/TrEMBL
    A0A8C2CW41, A0A9R0A3D3
    Conserved Domains (1) summary
    PRK10767
    Location:3 → 132
    PRK10767; chaperone protein DnaJ; Provisional

  3. XM_042728041.1 → XP_042583975.1  dnaJ homolog subfamily B member 6b isoform X3

    UniProtKB/TrEMBL
    A0A8C2CW41, A0A9R0A3T4
    Conserved Domains (1) summary
    PRK10767
    Location:3 → 132
    PRK10767; chaperone protein DnaJ; Provisional
Nucleotide Protein
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