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si:dkeyp-82a1.6 torsin-1A-interacting protein 2 [ Cyprinus carpio (common carp) ]

Gene ID: 109095167, updated on 14-Mar-2024

Summary

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Gene symbol
si:dkeyp-82a1.6
Gene description
torsin-1A-interacting protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
Orthologs
zebrafish all
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Genomic context

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See si:dkeyp-82a1.6 in Genome Data Viewer
Location:
chromosome: A8
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) A8 NC_056579.1 (10438158..10440847, complement)
100 previous assembly common carp genome (GCF_000951615.1) 16 NC_031712.1 (4717342..4720450)

Chromosome A8 - NC_056579.1Genomic Context describing neighboring genes Neighboring gene HAUS augmin-like complex, subunit 5 Neighboring gene uncharacterized LOC122145915 Neighboring gene uncharacterized LOC109061954 Neighboring gene aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056579.1 Reference ASM1834038v1 Primary Assembly

    Range
    10438158..10440847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042763025.1 → XP_042618959.1  torsin-1A-interacting protein 2

    UniProtKB/TrEMBL
    A0A8C1N9V7, A0A9Q9YEX9
Nucleotide Protein
Heading Accession and Version

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