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LOC109093676 kin of IRRE-like protein 1 [ Cyprinus carpio (common carp) ]

Gene ID: 109093676, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109093676
Gene description
kin of IRRE-like protein 1
See related
Ensembl:ENSCCRG00000027714
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

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See LOC109093676 in Genome Data Viewer
Location:
chromosome: A7
Exon count:
15
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) A7 NC_056578.1 (11312337..11357984, complement)
100 previous assembly common carp genome (GCF_000951615.1) 14 NC_031710.1 (3472082..3484792)

Chromosome A7 - NC_056578.1Genomic Context describing neighboring genes Neighboring gene high affinity immunoglobulin epsilon receptor subunit gamma-like Neighboring gene NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial-like Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056578.1 Reference ASM1834038v1 Primary Assembly

    Range
    11312337..11357984 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042759634.1 → XP_042615568.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C1L061, A0A9J7X740, A0A9Q9Y8G2
    Conserved Domains (4) summary
    smart00409
    Location:313 → 388
    IG; Immunoglobulin
    smart00410
    Location:232 → 303
    IG_like; Immunoglobulin like
    cd00096
    Location:408 → 412
    Ig; Ig strand B [structural motif]
    cl11960
    Location:390 → 493
    Ig; Immunoglobulin domain

  2. XM_042759633.1 → XP_042615567.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C1L061, A0A9Q9Y8G1
    Conserved Domains (4) summary
    smart00409
    Location:313 → 388
    IG; Immunoglobulin
    smart00410
    Location:232 → 303
    IG_like; Immunoglobulin like
    cd00096
    Location:408 → 412
    Ig; Ig strand B [structural motif]
    cl11960
    Location:390 → 493
    Ig; Immunoglobulin domain
Nucleotide Protein
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