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kptn kaptin (actin binding protein) [ Cyprinus carpio (common carp) ]

Gene ID: 109090332, updated on 14-Mar-2024

Summary

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Gene symbol
kptn
Gene description
kaptin (actin binding protein)
See related
Ensembl:ENSCCRG00000027527
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
Orthologs
human zebrafish all
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Genomic context

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See kptn in Genome Data Viewer
Location:
chromosome: B5
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B5 NC_056601.1 (11712943..11716965, complement)
100 previous assembly common carp genome (GCF_000951615.1) 10 NC_031706.1 (2255231..2260633)

Chromosome B5 - NC_056601.1Genomic Context describing neighboring genes Neighboring gene serine and arginine rich splicing factor 7a Neighboring gene heterogeneous nuclear ribonucleoprotein L Neighboring gene cone-rod homeobox Neighboring gene histone H3.3A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of KICSTOR complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KICSTOR complex protein kaptin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056601.1 Reference ASM1834038v1 Primary Assembly

    Range
    11712943..11716965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042724321.1 → XP_042580255.1  KICSTOR complex protein kaptin isoform X2

    UniProtKB/TrEMBL
    A0A8C2DYL8, A0A9R0A0A3

  2. XM_042724320.1 → XP_042580254.1  KICSTOR complex protein kaptin isoform X1

    UniProtKB/TrEMBL
    A0A8C1UFC1, A0A8C2DYL8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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