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kirrel3a kirre like nephrin family adhesion molecule 3a [ Cyprinus carpio (common carp) ]

Gene ID: 109087959, updated on 14-Mar-2024

Summary

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Gene symbol
kirrel3a
Gene description
kirre like nephrin family adhesion molecule 3a
See related
Ensembl:ENSCCRG00000018788 Ensembl:ENSCCRG00000037267
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
Orthologs
human zebrafish all
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Genomic context

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See kirrel3a in Genome Data Viewer
Location:
chromosome: B10
Exon count:
18
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B10 NC_056606.1 (18537538..18661871)
100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017545429.1 (77500..110765)

Chromosome B10 - NC_056606.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109087957 Neighboring gene somatolactin beta Neighboring gene CXADR-like membrane protein Neighboring gene small fragment nuclease

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056606.1 Reference ASM1834038v1 Primary Assembly

    Range
    18537538..18661871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042733026.1 → XP_042588960.1  LOW QUALITY PROTEIN: kin of IRRE-like protein 3

    UniProtKB/TrEMBL
    A0A8C1DZH2, A0A8C1WQN2, A0A9Q9WSV3
    Conserved Domains (3) summary
    smart00408
    Location:134 → 204
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:25 → 114
    IG; Immunoglobulin
    cd05758
    Location:379 → 476
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases