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LOC109080115 VIP36-like protein [ Cyprinus carpio (common carp) ]

Gene ID: 109080115, updated on 19-Jun-2024

Summary

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Gene symbol
LOC109080115
Gene description
VIP36-like protein
See related
Ensembl:ENSCCRG00000029893
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

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See LOC109080115 in Genome Data Viewer
Location:
chromosome: A5
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) A5 NC_056576.1 (15718709..15723793, complement)
100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017542184.1 (191534..196555, complement)

Chromosome A5 - NC_056576.1Genomic Context describing neighboring genes Neighboring gene U3 small nucleolar ribonucleoprotein protein IMP4-like Neighboring gene serine/threonine-protein kinase A-Raf-like Neighboring gene leukocyte surface antigen CD53-like Neighboring gene T-box transcription factor TBX3-like Neighboring gene TM2 domain-containing protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056576.1 Reference ASM1834038v1 Primary Assembly

    Range
    15718709..15723793 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019095207.2 → XP_018950752.1  VIP36-like protein

    UniProtKB/TrEMBL
    A0A8C1ZUY9, A0A8C2KAW9
    Related
    ENSCCRP00000055891.1
Nucleotide Protein
Heading Accession and Version

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