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Tsp_08686 putative laminin B [ Trichinella spiralis ]

Gene ID: 10907122, updated on 13-Aug-2016

Summary

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Gene symbol
Tsp_08686
Gene description
putative laminin B
Locus tag
Tsp_08686
Gene type
protein coding
RNA name
putative laminin B
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
29

NW_003526945.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase RIO1 Neighboring gene laminin subunit alpha-1 Neighboring gene vacuolar protein sorting-associated protein 28 Neighboring gene vacuolar protein sorting-associated protein 28

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003526945.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Names
putative laminin B

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003526945.1 Reference assembly

    Range
    3942643..3949877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003373911.1 → XP_003373959.1  putative laminin B [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003373959.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5SMX5
    Conserved Domains (5) summary
    smart00180
    Location:871 → 916
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:968 → 1013
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00052
    Location:479 → 601
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1064 → 1112
    Laminin_EGF; Laminin EGF domain
    cl02806
    Location:9 → 161
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
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