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LOC109069464 crk-like protein [ Cyprinus carpio (common carp) ]

Gene ID: 109069464, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109069464
Gene description
crk-like protein
See related
Ensembl:ENSCCRG00000045323
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

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See LOC109069464 in Genome Data Viewer
Location:
chromosome: B21
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B21 NC_056617.1 (10382797..10396300)
100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017539153.1 (188057..199622)

Chromosome B21 - NC_056617.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 74B-like Neighboring gene mediator of RNA polymerase II transcription subunit 15-like Neighboring gene phosphoglycerate mutase 2 Neighboring gene neurofilament light polypeptide-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
crk-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056617.1 Reference ASM1834038v1 Primary Assembly

    Range
    10382797..10396300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042748541.1 → XP_042604475.1  crk-like protein

    UniProtKB/TrEMBL
    A0A8C1HY66, A0A8C1XKS1, A0A8C2PYB2
    Conserved Domains (3) summary
    cd09926
    Location:6 → 106
    SH2_CRK_like; Src homology 2 domain found in cancer-related signaling adaptor protein CRK
    cd11758
    Location:127 → 181
    SH3_CRK_N; N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins
    cl17036
    Location:236 → 292
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
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