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LOC109068907 polypeptide N-acetylgalactosaminyltransferase 3-like [ Cyprinus carpio (common carp) ]

Gene ID: 109068907, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109068907
Gene description
polypeptide N-acetylgalactosaminyltransferase 3-like
See related
Ensembl:ENSCCRG00000024351
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

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See LOC109068907 in Genome Data Viewer
Location:
chromosome: A9
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) A9 NC_056580.1 (26802534..26825706, complement)
100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017539030.1 (26038..43898)

Chromosome A9 - NC_056580.1Genomic Context describing neighboring genes Neighboring gene xin actin-binding repeat-containing protein 2-like Neighboring gene uncharacterized LOC109075358 Neighboring gene cysteine-serine-rich nuclear protein 3 Neighboring gene tetratricopeptide repeat domain 21B Neighboring gene sodium channel protein type 1 subunit alpha-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056580.1 Reference ASM1834038v1 Primary Assembly

    Range
    26802534..26825706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042764310.1 → XP_042620244.1  polypeptide N-acetylgalactosaminyltransferase 3-like

    UniProtKB/TrEMBL
    A0A8C1CAR9, A0A8C1P7Y5, A0A8C1Z532, A0A8C2CKV9, A0A9R0B2L7
    Conserved Domains (2) summary
    cd02510
    Location:182 → 487
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:500 → 621
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_042764309.1 → XP_042620243.1  polypeptide N-acetylgalactosaminyltransferase 3-like

    UniProtKB/TrEMBL
    A0A8C1CAR9, A0A8C1P7Y5, A0A8C1Z532, A0A8C2CKV9, A0A9R0B2L7
    Conserved Domains (2) summary
    cd02510
    Location:182 → 487
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:500 → 621
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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