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LOC109063441 heparan sulfate glucosamine 3-O-sulfotransferase 5 [ Cyprinus carpio (common carp) ]

Gene ID: 109063441, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109063441
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 5
See related
Ensembl:ENSCCRG00000040591
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
Also known as
hs3st5
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Genomic context

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See LOC109063441 in Genome Data Viewer
Location:
chromosome: B20
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B20 NC_056616.1 (1182235..1184099, complement)
100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017538232.1 (597776..599053, complement)

Chromosome B20 - NC_056616.1Genomic Context describing neighboring genes Neighboring gene 5'-nucleotidase domain containing 1 Neighboring gene collagen, type X, alpha 1b Neighboring gene fyn-related Src family tyrosine kinase Neighboring gene small nucleolar RNA U3 Neighboring gene prospero homeobox protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 5
Names
heparan sulfate-glucosamine 3-sulfotransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056616.1 Reference ASM1834038v1 Primary Assembly

    Range
    1182235..1184099 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019080517.2 → XP_018936062.1  heparan sulfate glucosamine 3-O-sulfotransferase 5

    UniProtKB/TrEMBL
    A0A8C1KQE0, A0A9Q9ZE05
    Related
    ENSCCRP00000075110.1
Nucleotide Protein
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