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LOC109063239 heparan sulfate 2-O-sulfotransferase 1 [ Cyprinus carpio (common carp) ]

Gene ID: 109063239, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109063239
Gene description
heparan sulfate 2-O-sulfotransferase 1
See related
Ensembl:ENSCCRG00000026178
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

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See LOC109063239 in Genome Data Viewer
Location:
chromosome: A6
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) A6 NC_056577.1 (16824796..16899518, complement)
100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017538227.1 (510226..518662, complement)

Chromosome A6 - NC_056577.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase N2-like Neighboring gene LIM domain transcription factor LMO4 Neighboring gene zinc finger protein DZIP1L-like Neighboring gene transcription factor Sox-14-like Neighboring gene transfer RNA isoleucine (anticodon AAU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate 2-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056577.1 Reference ASM1834038v1 Primary Assembly

    Range
    16824796..16899518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042758217.1 → XP_042614151.1  heparan sulfate 2-O-sulfotransferase 1

    UniProtKB/TrEMBL
    A0A8C1PHZ3, A0A8C2CTN3, A0A9J7X9V6, A0A9J7ZHV5
Nucleotide Protein
Heading Accession and Version

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