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LOC109051355 probable serine/threonine-protein kinase kinX [ Cyprinus carpio (common carp) ]

Gene ID: 109051355, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109051355
Gene description
probable serine/threonine-protein kinase kinX
See related
Ensembl:ENSCCRG00000040811
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

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See LOC109051355 in Genome Data Viewer
Location:
chromosome: B2
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B2 NC_056598.1 (15593139..15609796)
100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017537761.1 (64024..74367)

Chromosome B2 - NC_056598.1Genomic Context describing neighboring genes Neighboring gene U2 snRNP-associated SURP motif-containing protein-like Neighboring gene uncharacterized LOC122136196 Neighboring gene alpha-tocopherol transfer protein-like Neighboring gene stress response protein nst1-like Neighboring gene uncharacterized LOC109106128 Neighboring gene inositol monophosphatase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable serine/threonine-protein kinase kinX

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056598.1 Reference ASM1834038v1 Primary Assembly

    Range
    15593139..15609796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042718318.1 → XP_042574252.1  probable serine/threonine-protein kinase kinX isoform X6

    UniProtKB/TrEMBL
    A0A8C1MME0, A0A9Q9ZUA4
    Conserved Domains (1) summary
    pfam05279
    Location:22 → 145
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  2. XM_042718315.1 → XP_042574249.1  probable serine/threonine-protein kinase kinX isoform X3

    UniProtKB/TrEMBL
    A0A8C1ZBG4, A0A9Q9VZV4
    Conserved Domains (1) summary
    pfam05279
    Location:22 → 145
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  3. XM_042718317.1 → XP_042574251.1  probable serine/threonine-protein kinase kinX isoform X5

    UniProtKB/TrEMBL
    A0A8C1ZB27, A0A9Q9ZV98
    Conserved Domains (1) summary
    pfam05279
    Location:22 → 129
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  4. XM_042718313.1 → XP_042574247.1  probable serine/threonine-protein kinase kinX isoform X2

    UniProtKB/TrEMBL
    A0A9J8BMN0, A0A9Q9VZV3
    Conserved Domains (1) summary
    pfam05279
    Location:25 → 147
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  5. XM_042718316.1 → XP_042574250.1  probable serine/threonine-protein kinase kinX isoform X4

    UniProtKB/TrEMBL
    A0A9J8CQW5, A0A9Q9VZV1
    Conserved Domains (1) summary
    pfam05279
    Location:25 → 132
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  6. XM_042718312.1 → XP_042574246.1  probable serine/threonine-protein kinase kinX isoform X1

    UniProtKB/TrEMBL
    A0A9J8BMN0, A0A9Q9VZY4
    Conserved Domains (1) summary
    pfam05279
    Location:25 → 147
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
Nucleotide Protein
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